Identification of genetically predicted DNA methylation markers associated with non-small cell lung cancer risk among 34,964 cases and 448,579 controls.
Document Type
Article
Publication Date
12-6-2023
Publication Title
Cancer
Keywords
washington; swedish; swedish cancer
Abstract
BACKGROUND: Although the associations between genetic variations and lung cancer risk have been explored, the epigenetic consequences of DNA methylation in lung cancer development are largely unknown. Here, the genetically predicted DNA methylation markers associated with non-small cell lung cancer (NSCLC) risk by a two-stage case-control design were investigated.
METHODS: The genetic prediction models for methylation levels based on genetic and methylation data of 1595 subjects from the Framingham Heart Study were established. The prediction models were applied to a fixed-effect meta-analysis of screening data sets with 27,120 NSCLC cases and 27,355 controls to identify the methylation markers, which were then replicated in independent data sets with 7844 lung cancer cases and 421,224 controls. Also performed was a multi-omics functional annotation for the identified CpGs by integrating genomics, epigenomics, and transcriptomics and investigation of the potential regulation pathways.
RESULTS: Of the 29,894 CpG sites passing the quality control, 39 CpGs associated with NSCLC risk (Bonferroni-corrected p ≤ 1.67 × 10
CONCLUSIONS: Sixteen promising DNA methylation markers associated with NSCLC were identified. Changes of the methylation level at these CpGs might influence the development of NSCLC by regulating the expression of genes nearby.
PLAIN LANGUAGE SUMMARY: The epigenetic consequences of DNA methylation in lung cancer development are still largely unknown. This study used summary data of large-scale genome-wide association studies to investigate the associations between genetically predicted levels of methylation biomarkers and non-small cell lung cancer risk at the first time. This study looked at how well larotrectinib worked in adult patients with sarcomas caused by TRK fusion proteins. These findings will provide a unique insight into the epigenetic susceptibility mechanisms of lung cancer.
Clinical Institute
Cancer
Department
Oncology
Department
Pulmonary Medicine
Department
Epidemiology
Recommended Citation
Zhao, Xiaoyu; Yang, Meiqi; Fan, Jingyi; Wang, Mei; Wang, Yifan; Qin, Na; Zhu, Meng; Jiang, Yue; Gorlova, Olga Y; Gorlov, Ivan P; Albanes, Demetrius; Lam, Stephen; Tardón, Adonina; Chen, Chu; Goodman, Gary E; Bojesen, Stig E; Landi, Maria Teresa; Johansson, Mattias; Risch, Angela; Wichmann, H-Erich; Bickeböller, Heike; Christiani, David C; Rennert, Gad; Arnold, Susanne M; Brennan, Paul; Field, John K; Shete, Sanjay; Le Marchand, Loïc; Liu, Geoffrey; Hung, Rayjean J; Andrew, Angeline S; Kiemeney, Lambertus A; Zienolddiny, Shanbeh; Grankvist, Kjell; Johansson, Mikael; Caporaso, Neil E; Woll, Penella J; Lazarus, Philip; Schabath, Matthew B; Aldrich, Melinda C; Patel, Alpa V; Davies, Michael P A; Ma, Hongxia; Jin, Guangfu; Hu, Zhibin; Amos, Christopher I; Shen, Hongbing; and Dai, Juncheng, "Identification of genetically predicted DNA methylation markers associated with non-small cell lung cancer risk among 34,964 cases and 448,579 controls." (2023). Articles, Abstracts, and Reports. 8185.
https://digitalcommons.providence.org/publications/8185
