Submissions from 2021
Comparing accuracy of bedside ultrasound examination with physical examination for detection of pleural effusion., Michael H Walsh, Kang X Zhang, Emily J Cox, Justin M Chen, Nicholas G Cowley, Christopher J Oleynick, Leo M Smyth, and Irene W Y Ma
Mid-Year Update., Jeffrey C Wang, Jens R Chapman, and Karsten Wiechert
COVID-19 and the Future., Jeffrey C Wang, Karsten Wiechert, and Jens R Chapman
A Guide to Creating a Gender-Affirming Environment Through a Community Lens Approach., Kevin S Wang, Max Sutherland, Alec W Gibson, Theodore Gobillot, Elizabeth Conley, and Kim Matsumoto
Alzheimer's disease and progressive supranuclear palsy share similar transcriptomic changes in distinct brain regions., Xue Wang, Mariet Allen, Özkan İş, Joseph S Reddy, Frederick Q Tutor-New, Monica Castanedes Casey, Minerva M Carrasquillo, Stephanie R Oatman, Yuhao Min, Yan W Asmann, Cory C Funk, Thuy Nguyen, Charlotte Cg Ho, Kimberly G Malphrus, Nicholas T Seyfried, Allan I Levey, Steven G Younkin, Melissa E Murray, Dennis W Dickson, Nathan D Price, Todd E Golde, and Nilufer Ertekin-Taner
Circulating activated immune cells as a potential blood biomarkers of non-small cell lung cancer occurrence and progression., Yingyi Wang, Na Zhou, Rui Zhu, Xiaoyuan Li, Zhao Sun, Yang Gao, Wei Liu, Changting Meng, Yuping Ge, Chunmei Bai, Taisheng Li, and Hongsheng Liu
2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job., Susan T Weintraub, Michael R Hoopmann, and Magnus Palmblad
Assessment of Adult Spinal Deformity Complication Timing and Impact on Two-Year Outcomes Using a Comprehensive Adult Spinal Deformity Classification System., Joseph B Wick, Hai V Le, Renaud Lafage, Munish C Gupta, Robert A Hart, Gregory M Mundis, Shay Bess, Douglas C Burton, Christopher P Ames, Justin S Smith, Christopher I Shaffrey, Frank J Schwab, Peter G Passias, Themistocles S Protopsaltis, Virginie Lafage, Eric O Klineberg, and International Sp;ine Study Group
GSJ Annual Survey 2021., Karsten Wiechert, Jens R Chapman, and Jeffrey C Wang
Steps Explained: The Review Process of, Karsten Wiechert, Jens R Chapman, and Jeffrey C Wang
Submitting Manuscripts but Not for Publication? Black Sheep Authors in Publishing., Karsten Wiechert, Jens R Chapman, and Jeffrey C Wang
Ibrutinib Plus Venetoclax for First-Line Treatment of Chronic Lymphocytic Leukemia: Primary Analysis Results From the Minimal Residual Disease Cohort of the Randomized Phase II CAPTIVATE Study., William G Wierda, John N Allan, Tanya Siddiqi, Thomas J Kipps, Stephen Opat, Alessandra Tedeschi, Xavier C Badoux, Bryone J Kuss, Sharon Jackson, Carol Moreno, Ryan Jacobs, John M Pagel, Ian Flinn, Yvonne Pak, Cathy Zhou, Edith Szafer-Glusman, Joi Ninomoto, James P Dean, Danelle F James, Paolo Ghia, and Constantine S Tam
CIDer: A Statistical Framework for Interpreting Differences in CID and HCD Fragmentation., Damien B Wilburn, Alicia L Richards, Danielle L Swaney, and Brian C Searle
Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans., Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, and Nathan D Price
Gut microbiome pattern reflects healthy ageing and predicts survival in humans., Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gustavo Glusman, Max Robinson, James T Yurkovich, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, and Nathan D Price
From taxonomy to metabolic output: what factors define gut microbiome health?, Tomasz Wilmanski, Noa Rappaport, Christian Diener, Sean M Gibbons, and Nathan D Price
Minimally invasive thymectomy for myasthenia gravis favours left-sided approach and low severity class., Candice L. Wilshire, Sandra L Blitz, Carson C Fuller, Jens C Rückert, Feng Li, Robert J Cerfolio, Asem F Ghanim, Mark W Onaitis, Inderpal S Sarkaria, Dennis A Wigle, Vijay Joshi, Scott Reznik, Adam J Bograd, Eric Vallières, and Brian E Louie
Clinical Evolution of Practice Patterns in the Management of Pleural Space Infections: A Community-based Healthcare Network Review., Candice L. Wilshire, Anee Sophia Jackson, Leah C Horslen, Joshua R Rayburn, Carson C Fuller, Christopher R Gilbert, Najib M Rahman, Eihab Bedawi, Adam J Bograd, Eric Vallieres, and Jed A Gorden
Acute PR3-ANCA vasculitis in an asymptomatic COVID-19 teenager., Taylor Wintler, Monica Zherebtsov, Susanne Carmack, Rebecca Muntean, and Sarah J Hill
Impact of clinical outcomes and imaging measures on health-related quality of life in secondary progressive MS., Marcus W Koch, Jop Mostert, P Repovic, James D Bowen, Eva Strijbis, Bernard Uitdehaag, and Gary Cutter
Climate-smart and climate-ready health systems - the time is now, Jessica Wolff and Elizabeth Schenk
Serum brain-derived neurotrophic factor remains elevated after long term follow-up of combat veterans with chronic post-traumatic stress disorder., Gwyneth W Y Wu, Owen M Wolkowitz, Victor I Reus, Jee In Kang, Mathea Elnar, Reuben Sarwal, Janine D Flory, Duna Abu-Amara, Rasha Hammamieh, Aarti Gautam, Francis J Doyle, Rachel Yehuda, Charles R Marmar, Marti Jett, Synthia H Mellon, SBPBC Collaborators, Leroy Hood, Kai Wang, and Inyoul Lee
Improved gastrointestinal profile with diroximel fumarate is associated with a positive impact on quality of life compared with dimethyl fumarate: results from the randomized, double-blind, phase III EVOLVE-MS-2 study., Annette Wundes, Sibyl Wray, Ralf Gold, Barry A Singer, Elzbieta Jasinska, Tjalf Ziemssen, Jerome de Seze, P Repovic, Hailu Chen, Jerome Hanna, Jordan Messer, Catherine Miller, and Robert T Naismith
A Preoperative Nomogram to Predict Renal Function Insufficiency for Cisplatin-based Adjuvant Chemotherapy Following Minimally Invasive Radical Nephroureterectomy (ROBUUST Collaborative Group)., Zhenjie Wu, Qi Chen, Hooman Djaladat, Andrea Minervini, Robert G Uzzo, Chandru P Sundaram, Koon H Rha, Mark L Gonzalgo, Reza Mehrazin, Elio Mazzone, Jamil Marcus, Alyssa Danno, James R Porter, Aeen Asghar, Fady Ghali, Georgi Guruli, Antoin Douglawi, Giovanni Cacciamani, Alireza Ghoreifi, Giuseppe Simone, Vitaly Margulis, Matteo Ferro, Riccardo Tellini, Andrea Mari, Abhishek Srivastava, James Steward, Ali Al-Qathani, Ahmad Al-Mujalhem, Amit Satish Bhattu, Alexander Mottrie, Firas Abdollah, Daniel D Eun, Ithaar Derweesh, Alessandro Veccia, Riccardo Autorino, and Linhui Wang
Exploration of Lipid Metabolism in Gastric Cancer: A Novel Prognostic Genes Expression Profile., Zhen Xiong, Yao Lin, Yan Yu, Xianghui Zhou, Jun Fan, Colin J Rog, Kailin Cai, Zheng Wang, Zhijie Chang, Guobin Wang, Kaixiong Tao, and Ming Cai
Hexokinase 2 discerns a novel circulating tumor cell population associated with poor prognosis in lung cancer patients., Liu Yang, Xiaowei Yan, Jie Chen, Qiong Zhan, Yingqi Hua, Shili Xu, Ziming Li, Zhuo Wang, Yu Dong, Dongqing Zuo, Min Xue, Yin Tang, Harvey R Herschman, Shun Lu, Qihui Shi, and Wei Wei
A DNA methylation clock associated with age-related illnesses and mortality is accelerated in men with combat PTSD., Ruoting Yang, Gwyneth W Y Wu, Josine E Verhoeven, Aarti Gautam, Victor I Reus, Jee In Kang, Janine D Flory, Duna Abu-Amara, PTSD Systems Biology Consortium, Leroy Hood, Francis J Doyle, Rachel Yehuda, Charles R Marmar, Marti Jett, Rasha Hammamieh, Synthia H Mellon, and Owen M Wolkowitz
Racial, Ethnic, and Sex Disparities in Patients With STEMI and Cardiogenic Shock., Lina Ya'qoub, Alejandro Lemor, Mohammed Dabbagh, William O'Neill, Akshay Khandelwal, Sara C Martinez, Nasrien E Ibrahim, Cindy Grines, Michelle Voeltz, and Mir B Basir
Ganitumab and metformin plus standard neoadjuvant therapy in stage 2/3 breast cancer., Douglas Yee, Claudine Isaacs, Denise M Wolf, Christina Yau, Paul Haluska, Karthik V Giridhar, Andres Forero-Torres, A Jo Chien, Anne M Wallace, Lajos Pusztai, Kathy S Albain, Erin D Ellis, Heather Beckwith, Barbara B Haley, Anthony D Elias, Judy C Boughey, Kathleen Kemmer, Rachel L Yung, Paula R Pohlmann, Debu Tripathy, Amy S Clark, Hyo S Han, Rita Nanda, Qamar J Khan, Kristen K Edmiston, Emanuel F Petricoin, Erica Stringer-Reasor, Carla I Falkson, Melanie Majure, Rita A Mukhtar, Teresa L Helsten, Stacy L Moulder, Patricia A Robinson, Julia D Wulfkuhle, Lamorna Brown-Swigart, Meredith Buxton, Julia L Clennell, Melissa Paoloni, Ashish Sanil, Scott Berry, Smita M Asare, Amy Wilson, Gillian L Hirst, Ruby Singhrao, Adam L Asare, Jeffrey B Matthews, Nola M Hylton, Angela DeMichele, Michelle Melisko, Jane Perlmutter, Hope S Rugo, W Fraser Symmans, Laura J Van't Veer, Donald A Berry, and Laura J Esserman
Adjuvant Radiation Field Extent and Sites of Failure in Node Positive Endometrioid Endometrial Cancer., D Yerramilli, Y H Chen, V Venkatachalam, G M Alban, D L Buscariollo, T Cheng, M King, J Pretz, A L Russo, and L J Lee
What Are Risk Factors for an Ileus After Posterior Spine Surgery?-A Case Control Study., Emre Yilmaz, Eric Benca, Akil P Patel, Sarah Hopkins, Ronen Blecher, Amir Abdul-Jabbar, Thomas M O'Lynnger, Rod J Oskouian, Daniel C Norvell, and Jens R Chapman
Cardiovascular Procedural Deferral and Outcomes over COVID-19 Pandemic Phases: A Multi-Center Study., Celina M Yong, Kateri J Spinelli, Shih Ting Chiu, Brandon Jones, Brian Penny, Santosh Gummidipundi, Shire Beach, Alex Perino, Mintu Turakhia, Paul Heidenreich, and Ty J Gluckman
Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2., Krystle Kq Yu, Stephanie Fischinger, Malisa T Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D Layton, Jennifer K Logue, Melissa S Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas M Franko, Robert Y Choi, Anna Wald, Dan H Barouch, David M Koelle, Douglas Lauffenburger, Helen Y Chu, Galit Alter, and Chetan Seshadri
Spatio-temporal hybrid neural networks reduce erroneous human "judgement calls" in the diagnosis of Takotsubo syndrome., Fahim Zaman, Rakesh Ponnapureddy, Yi Grace Wang, Amanda Chang, Linda M Cadaret, Ahmed Abdelhamid, Shubha D Roy, Majesh Makan, Ruihai Zhou, Manju B Jayanna, Eric Gnall, Xuming Dai, Avneet Singh, Jingsheng Zheng, Venkata S Boppana, Feng Wang, Pahul Singh, Xiaodong Wu, and Kan Liu
Autopopulus: A Novel Framework for Autoencoder Imputation on Large Clinical Datasets., Davina J Zamanzadeh, Panayiotis Petousis, Tyler A Davis, Susanne B Nicholas, Keith C Norris, Katherine Tuttle, Alex A T Bui, and Majid Sarrafzadeh
APOL1 genotype-associated morphologic changes among patients with focal segmental glomerulosclerosis., Jarcy Zee, Michelle T McNulty, Jeffrey B Hodgin, Olga Zhdanova, Sangeeta Hingorani, Jonathan Ashley Jefferson, Keisha L Gibson, Howard Trachtman, Alessia Fornoni, Katherine M Dell, Heather N Reich, Serena Bagnasco, Larry A Greenbaum, Richard A Lafayette, Debbie S Gipson, Elizabeth Brown, Matthias Kretzler, Gerald Appel, Kamalanathan K Sambandam, Katherine Tuttle, Dhruti Chen, Meredith A Atkinson, Marie C Hogan, Frederick J Kaskel, Kevin E Meyers, John O'Toole, Tarak Srivastava, Christine B Sethna, Michelle A Hladunewich, J J Lin, Cynthia C Nast, Vimal K Derebail, Jiten Patel, Suzanne Vento, Lawrence B Holzman, Ambarish M Athavale, Sharon G Adler, Kevin V Lemley, John C Lieske, Jonathan J Hogan, Crystal A Gadegbeku, Fernando C Fervenza, Chia-Shi Wang, Raed Bou Matar, Pamela Singer, Jeffrey B Kopp, Laura Barisoni, and Matthew G Sampson
Lung proteomic biomarkers associated with chronic obstructive pulmonary disease., Yu-Hang Zhang, Michael R Hoopmann, Peter J Castaldi, Kirsten Simonsen, Mukul K Midha, Michael H Cho, Gerard J Criner, Raphael Bueno, Jiangyuan Liu, Robert L Moritz, and Edwin K Silverman
Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses., Hong Zheng, Aditya M Rao, Denis Dermadi, Jiaying Toh, Lara Murphy Jones, Michele Donato, Yiran Liu, Yapeng Su, Cheng L Dai, Sergey A Kornilov, Minas Karagiannis, Theodoros Marantos, Yehudit Hasin-Brumshtein, Yudong D He, Evangelos J Giamarellos-Bourboulis, James R Heath, and Purvesh Khatri
Glucose-Dementia Association Is Consistent Over Blood Pressure/Antihypertensive Groups., Jing Zhou, Rod L Walker, Shelly L Gray, Zachary A Marcum, Douglas Barthold, James D Bowen, Wayne McCormick, Susan M McCurry, Eric B Larson, and Paul K Crane
The geometry of clinical labs and wellness states from deeply phenotyped humans., Anat Zimmer, Yael Korem, Noa Rappaport, Tomasz Wilmanski, Priyanka Baloni, Kathleen Jade, Max Robinson, Andrew T Magis, Jennifer Lovejoy, Sean M Gibbons, Leroy Hood, and Nathan D Price
Submissions from 2020
A high-stringency blueprint of the human proteome., Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlén, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael P Snyder, Ruedi Aebersold, and Mark S Baker
A Near-Optimal Control Method for Stochastic Boolean Networks., Boris Aguilar, Pan Fang, Reinhard Laubenbacher, and David Murrugarra
A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma., Boris Aguilar, David L Gibbs, David J Reiss, Mark McConnell, Samuel A Danziger, Andrew Dervan, Matthew Trotter, Douglas Bassett, Robert Hershberg, Alexander V Ratushny, and Ilya Shmulevich
Type 1 interferon-dependent repression of NLRC4 and iPLA2 licenses down-regulation of, Ajay Suresh Akhade, Shaikh M Atif, Bhavana S Lakshmi, Neha Dikshit, Kelly T Hughes, Ayub Qadri, and Naeha Subramanian
The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal Huntingtin., Azzam Aladdin, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, and Krisztina Tar
Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks., Mario L Arrieta-Ortiz, Christoph Hafemeister, Bentley Shuster, Nitin Baliga, Richard Bonneau, and Patrick Eichenberger
Acalabrutinib Plus RICE Followed By Autologous Hematopoietic Cell Transplantation and/or Acalabrutinib Maintenance Therapy for Patients with Relapsed/Refractory Diffuse Large B-Cell Lymphoma, Neil Bailey, Tenzin Tsomo, Jennie Szeto, William Bensinger, Daniel N Egan, Livia Hegerova, Raya Mawad, Ami Batchelder, Joanna Fesler, Heather Holdread, Sonia Glennie, Judson Hall, Joseph Ferry, Megumi Bailey, David Kane, John M Pagel, and Krish Patel
Patients with ineffective esophageal motility undergoing magnetic sphincter augmentation demonstrate outcomes similar to patients with normal esophageal motility, GN Baison, AS Jackson, Candice L. Wilshire, P Jackson, BA Jobe, V Lazzari, L Bonavina, R Heidrick, RCW Bell, SF Schopmann, CP Dunn, JC Lipham, CM Dunst, and See additional authors in comments
Patients with ineffective esophageal motility undergoing magnetic sphincter augmentation demonstrate outcomes similar to patients with normal esophageal motility, GN Baison, AS Jackson, Candice L. Wilshire, P Jackson, BA Jobe, V Lazzari, L Bonavina, R Heidrick, RCW Bell, SF Schopmann, CP Dunn, JC Lipham, CM Dunst, and See additional authors in comments
Identifying Personalized Metabolic Signatures in Breast Cancer., Priyanka Baloni, Wikum Dinalankara, John C Earls, Theo A Knijnenburg, Donald Geman, Luigi Marchionni, and Nathan D Price
Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer's Disease., Priyanka Baloni, Cory C Funk, Jingwen Yan, James T Yurkovich, Alexandra Kueider-Paisley, Kwangsik Nho, Almut Heinken, Wei Jia, Siamak Mahmoudiandehkordi, Gregory Louie, Andrew J Saykin, Matthias Arnold, Gabi Kastenmüller, William J Griffiths, Ines Thiele, Alzheimer’s Disease Metabolomics Consortium, Rima Kaddurah-Daouk, and Nathan D Price
Minimally invasive sigmoidectomy for diverticular disease decreases inpatient opioid use: Results of a propensity score-matched study., Amir Bastawrous, I-Fan Shih, Yanli Li, and Robert K Cleary
Planting the Seeds of Health and Resilience, Shawna Beese, Teresa Bigand, and Marian L. Wilson
Position statement on priorities for artificial intelligence in GI endoscopy: a report by the ASGE Task Force., Tyler M Berzin, Sravanthi Parasa, Michael B Wallace, Seth A Gross, Alessandro Repici, and Prateek Sharma
Salvage Lung Resections After Definitive Chemoradiotherapy: A Safe and Effective Oncologic Option., Adam J Bograd, Catherine Mann, Jed A Gorden, Christopher R Gilbert, Alexander S Farivar, Ralph W Aye, Brian Louie, and Eric Vallières
Surgery as a Component of Multimodality Care for Known Stage IIIA-N2 Non-small Cell Lung Cancer., Adam J Bograd and Eric Vallières
Integrative network modeling reveals mechanisms underlying T cell exhaustion., Hamid Bolouri, Mary Young, Joshua Beilke, Rebecca Johnson, Brian Fox, Lu Huang, Cristina Costa Santini, Christopher Mark Hill, Anne-Renee van der Vuurst de Vries, Paul Shannon, Andrew Dervan, Pallavur Sivakumar, Matthew Trotter, Douglas Bassett, and Alexander Ratushny
Comment on: Systematic review of the introduction and evaluation of magnetic augmentation of the lower oesophageal sphincter for gastro-oesophageal reflux disease., L Bonavina, N Boyle, C Dunn, T Horbach, T B Knowles, J C Lipham, Brian Louie, S Markar, S F Schppmann, and J Zehetner
Visualizing metabolic network dynamics through time-series metabolomic data., Lea F Buchweitz, James T Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A King, Laurence Yang, Freyr Jóhannsson, Ólafur E Sigurjónsson, Óttar Rolfsson, Julian Heinrich, and Andreas Dräger
Rib Plating Offers Favorable Outcomes in Patients With Chronic Nonunion of Prior Rib Fractures., Kerrie E Buehler, Candice L. Wilshire, Adam J Bograd, and Eric Vallieres
Imaging center administrators report a lack of physician champion and resources for follow-up as barriers to lung cancer screening implementation in a community-based healthcare network The American Thoracic Society Philadelphia, Pennsylvania, KE Buehler, Candice L. Wilshire, and See all authors in comments
In the last month of life the majority of patients with stage IV non-small cell lung cancer experience in-hospital days and in-hospital death The American Thoracic Society Philadelphia, Pennsylvania, KE Buehler, Candice L. Wilshire, and See all authors in comments
OPIOID USE DISORDERS IN THE HOSPITALIZED PATIENT: CHRONIC DISEASE OR MORAL FAILING, Amy Burns
POSTER: Reducing Treatment inequity of Substance use Disorders through Education., Amy Burns and See full list of authors in the comments
Impact of pulmonary function on pulmonary complications after robotic-assisted thoracoscopic lobectomy., Christopher Cao, Brian E Louie, Franca Melfi, Giulia Veronesi, Rene Razzak, Gaetano Romano, Pierluigi Novellis, Neel K Ranganath, and Bernard J Park
Discovery of driver non-coding splice-site-creating mutations in cancer., Song Cao, Daniel Cui Zhou, Clara Oh, Reyka G Jayasinghe, Yanyan Zhao, Christopher J Yoon, Matthew A Wyczalkowski, Matthew H Bailey, Terrence Tsou, Qingsong Gao, Andrew Malone, Sheila Reynolds, Ilya Shmulevich, Michael C Wendl, Feng Chen, and Li Ding
Community standards to facilitate development and address challenges in metabolic modeling., Maureen A Carey, Andreas Dräger, Moritz E Beber, Jason A Papin, and James T Yurkovich
Selective carbon sources influence the end products of microbial nitrate respiration., Hans K Carlson, Lauren M Lui, Morgan N Price, Alexey E Kazakov, Alex V Carr, Jennifer V Kuehl, Trenton K Owens, Torben Nielsen, Adam P Arkin, and Adam M Deutschbauer
Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer., Jian Carrot-Zhang, Nyasha Chambwe, Jeffrey S Damrauer, Theo A Knijnenburg, A Gordon Robertson, Christina Yau, Wanding Zhou, Ashton C Berger, Kuan-Lin Huang, Justin Y Newberg, R Jay Mashl, Alessandro Romanel, Rosalyn W Sayaman, Francesca Demichelis, Ina Felau, Garrett M Frampton, Seunghun Han, Katherine A Hoadley, Anab Kemal, Peter W Laird, Alexander J Lazar, Xiuning Le, Ninad Oak, Hui Shen, Christopher K Wong, Jean C Zenklusen, Elad Ziv, Cancer Genome Atlas Analysis Network, Andrew D Cherniack, and Rameen Beroukhim
Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development., Gregory A Cary, Brenna S McCauley, Olga Zueva, Joseph Pattinato, William J R Longabaugh, and Veronica F Hinman
STARS interventions for violence reduction: Safety, technology, activity, relief, and surroundings., Christina Anne Case
STARS Interventions for Continuous Observation and Violence Reduction: Safety, Technology, Activity, Relief, Surroundings., Christina Anne Case
Minimally Invasive Esophagectomy: A Consensus Statement., Robert J Cerfolio, Anne-Sophie Laliberte, Shanda Blackmon, Jelle P Ruurda, Richard van Hillegersberg, Inderpal Sarkaria, and Brian Louie
Society for Immunotherapy of Cancer clinical and biomarkers data sharing resource document: Volume II-practical challenges., Alessandra Cesano, Michael A Cannarile, Sacha Gnjatic, Bruno Gomes, Justin Guinney, Vaios Karanikas, Mohan Karkada, John M Kirkwood, Beatrix Kotlan, Giuseppe V Masucci, Els Meeusen, Anne Monette, Aung Naing, Vésteinn Thorsson, Nicholas Tschernia, Ena Wang, Daniel K Wells, Timothy L Wyant, and Sergio Rutella
Cancer Systems Biology in the Era of Single-Cell Multi-Omics., Hanjun Cheng, Rong Fan, and Wei Wei
A novel landscape of nuclear human CDK2 substrates revealed by in situ phosphorylation., Yong Chi, John H Carter, Jherek Swanger, Alexander V Mazin, Robert L Moritz, and Bruce E Clurman
Unique challenges for glioblastoma immunotherapy - Discussions across neuro-oncology and non-neuro-oncology experts in cancer immunology., Pavlina Chuntova, Frances Chow, Payal Watchmaker, Mildred Galvez, Amy B Heimberger, Evan W Newell, Aaron Diaz, Ronald A DePinho, Ming O Li, E John Wherry, Duane Mitchell, Masaki Terabe, Derek A Wainwright, Jay A Berzofsky, Christel Herold-Mende, James R Heath, Michael Lim, Kim A Margolin, E Antonio Chiocca, Noriyuki Kasahara, Benjamin M Ellingson, Christine Brown, Yvonne Chen, Peter Fecci, David A Reardon, Gavin P Dunn, Linda M Liau, Joseph F Costello, Wolfgang Wick, Timothy Cloughesy, William C Timmer, Patrick Y Wen, Robert M Prins, Michael Platten, and Hideho Okada
Clinician engagement in research as a path toward the learning health system: A regional survey across the northwestern United States., Elizabeth L Ciemins, Brenda L Mollis, Jeannine M Brant, Laurie A Hassell, Sandra Albritton, Paul Amoroso, Angela Lloyd, Jodi M Smith, Bethann M Pflugeisen, Katherine R Tuttle, and Laura-Mae Baldwin
Inferring evolutionary pathways and directed genotype networks of foodborne pathogens., Oliver M Cliff, Natalia McLean, Vitali Sintchenko, Kristopher M Fair, Tania C Sorrell, Stuart Kauffman, and Mikhail Prokopenko
Subgroup analysis of clinical and MRI outcomes in participants with a first clinical demyelinating event at risk of multiple sclerosis in the ORACLE-MS study., Bruce A C Cree, James D Bowen, Hans-Peter Hartung, Patrick Vermersch, Bruce Hughes, Doris Damian, Yann Hyvert, Fernando Dangond, Andrew Galazka, Megan Grosso, Daniel L Jones, and Thomas P Leist
Synthesizing Systems Biology Knowledge from Omics Using Genome-Scale Models., Sanjeev Dahal, James T Yurkovich, Hao Xu, Bernhard O Palsson, and Laurence Yang
Characterizing diversity in the tumor-immune microenvironment of distinct subclasses of gastroesophageal adenocarcinomas., S Derks, L K de Klerk, X Xu, T Fleitas, K X Liu, Y Liu, F Dietlein, C Margolis, A M Chiaravalli, A C Da Silva, S Ogino, F G Akarca, G J Freeman, S J Rodig, J L Hornick, E van Allen, B Li, S X Liu, V Thorsson, and A J Bass
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics., Eric W Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Perez-Riverol, Jeremy J Carver, Deepti J Kundu, David García-Seisdedos, Andrew F Jarnuczak, Suresh Hewapathirana, Benjamin S Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J MacCoss, Yunping Zhu, Yasushi Ishihama, and Juan A Vizcaíno
MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota., Christian Diener, Sean M Gibbons, and Osbaldo Resendis-Antonio
Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort., Christian Diener, María de Lourdes Reyes-Escogido, Lilia M Jimenez-Ceja, Mariana Matus, Claudia M Gomez-Navarro, Nathaniel D Chu, Vivian Zhong, M Elizabeth Tejero, Eric Alm, Osbaldo Resendis-Antonio, and Rodolfo Guardado-Mendoza
Outcomes following early versus delayed cholecystectomy performed for acute cholangitis., Andrew Discolo, Shelby Reiter, Bryce French, Danielle Hayes, Gary Lucas, Lancy Tan, James Scanlan, and Ryan Martinez
Glioblastoma Multiforme Stem Cell Cycle Arrest by Alkylaminophenol Through the Modulation of EGFR and CSC Signaling Pathways., Phuong Doan, Aliyu Musa, Akshaya Murugesan, Vili Sipilä, Nuno R Candeias, Frank Emmert-Streib, Pekka Ruusuvuori, Kirsi Granberg, Olli Yli-Harja, and Meenakshisundaram Kandhavelu
Scrotal and Penile Erythrodysesthesia Associated with Neoadjuvant Capecitabine Chemoradiation., Julie Dricken, Erica Pettke, John A Griffin, Henry Y Li, and Vivek Mehta
Raman-guided subcellular pharmaco-metabolomics for metastatic melanoma cells., Jiajun Du, Yapeng Su, Chenxi Qian, Dan Yuan, Kun Miao, Dongkwan Lee, Alphonsus H C Ng, Reto S Wijker, Antoni Ribas, Raphael D Levine, James R Heath, and Lu Wei
Connections Between Amyloid Beta and the Meningeal Lymphatics As a Possible Route for Clearance and Therapeutics., Graham Dupont, Joe Iwanaga, Emre Yilmaz, and R Shane Tubbs
CRI iAtlas: an interactive portal for immuno-oncology research., James A Eddy, Vésteinn Thorsson, Andrew E Lamb, David L Gibbs, Carolina Heimann, Jia Xin Yu, Verena Chung, Yooree Chae, Kristen Dang, Benjamin G Vincent, Ilya Shmulevich, and Justin Guinney
Artificial Intelligence: A Clarification of Misconceptions, Myths and Desired Status., Frank Emmert-Streib, Olli Yli-Harja, and Matthias Dehmer
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis using the PSI Extended FASTA Format (PEFF)., Jimmy K Eng and Eric W Deutsch
Longitudinal Effects of Left Ventricular Assist Device Implantation on Global and Domain-Specific Cognitive Function., Kenneth M Faulkner, Christopher V Chien, Quin E Denfeld, Jill M Gelow, Karen S Lyons, Kathleen L Grady, James O Mudd, and Christopher S Lee
The Efficacy of Passive Valve Antimicrobial Swab Caps Against Existing Clabsi Prevention Bundle in an Adult Hematology Inpatient Population: A Quality Improvement Initiative, Joseph F. Ferry, Neil Bailey, Vanessa Dunleavy, Joanna Fesler, Judson Hall, Sonia Glennie, William Bensinger, Raya Mawad, Krish Patel, Daniel N Egan, John M Pagel, and Livia Hegerova
Resolution of eicosanoid/cytokine storm prevents carcinogen and inflammation-initiated hepatocellular cancer progression., Anna Fishbein, Weicang Wang, Haixia Yang, Jun Yang, Victoria M Hallisey, Jianjun Deng, Sanne M L Verheul, Sung Hee Hwang, Allison Gartung, Yuxin Wang, Diane R Bielenberg, Sui Huang, Mark W Kieran, Bruce D Hammock, and Dipak Panigrahy
It's Time to Rethink Our Assumptions About Acute Wilson's Disease., Oren K Fix
Clinical Best Practice Advice for Hepatology and Liver Transplant Providers During the COVID-19 Pandemic: AASLD Expert Panel Consensus Statement., Oren K Fix, Bilal Hameed, Robert J Fontana, Ryan M Kwok, Brendan M McGuire, David C Mulligan, Daniel S Pratt, Mark W Russo, Michael L Schilsky, Elizabeth C Verna, Rohit Loomba, David E Cohen, Jorge A Bezerra, K Rajender Reddy, and Raymond T Chung
Telemedicine and Telehepatology During the COVID-19 Pandemic., Oren K Fix and Marina Serper
