Providence research from Washington locations.

Follow

Submissions from 2018

Link

Taking Systems Medicine to Heart., Kalliopi Trachana, Rhishikesh Bargaje, Gustavo Glusman, Nathan D Price, Sui Huang, and Leroy E Hood

PDF

Gcn4-Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein-Protein Complex., Lisa M Tuttle, Derek Pacheco, Linda Warfield, Jie Luo, Jeff Ranish, Steven Hahn, and Rachel E Klevit

Link

Can high-volume teams of anesthesiologists and surgeons decrease perioperative costs for pancreatic surgery?, Abhineet Uppal, Brooke Vuong, Ahmed Dehal, Stacey L Stern, Juan Mejia, Roshanthi Weerasinghe, Vandana Kapoor, Evan Ong, Paul D Hansen, and Anton J Bilchik

Link

Ocean acidification conditions increase resilience of marine diatoms., Jacob J Valenzuela, Adrián López García de Lomana, Allison Lee, E V Armbrust, Mónica V Orellana, and Nitin S Baliga

Link

Decane-1,2-diol derivatives as potential antitumor agents for the treatment of glioblastoma., Anisha Viswanathan, Anastasia Zhurina, Benedicta Assoah, Aleksi Paakkunainen, Aliyu Musa, Dinesh Kute, Konda Mani Saravanan, Olli Yli-Harja, Nuno R Candeias, and Meenakshisundaram Kandhavelu

Link

Abstract 12183: SLCO1B1 Genotype-Guided Statin Therapy Lowers LDL Cholesterol in Patients With Statin-Intolerance- A Randomized Controlled Trial, Deepak Voora, Emily Perry, Kavisha Singh, Gloria Trujillo, Nicholas Milazzo, Dillon Savard, Susanne Haga, Michael D. Musty, Yi-Ju Li, and Bruce Peyser

Link

High-speed Raman-encoded molecular imaging of freshly excised tissue surfaces with topically applied SERRS nanoparticles., Yu Winston Wang, Qian Yang, Soyoung Kang, Matthew A Wall, and Jonathan T C Liu

Link

Factors predicting attrition in community-based healthcare network lung cancer screening programs The International Association for the Study of Lung Cancer 19th World Conference on Lung Canc, Roshanthi Weerasignhe, Candice L. Wilshire, and See all authors in comments

POSTER: A QI PROJECT TO BRIDGE THE GAP BETWEEN PCP TO PSCYHIATRY REFERRALS, Kourtney Whiteley and Amy Burns

Link

Multicenter review suggests tunnelled pleural catheter use in antineoplastic therapy-related immun, Candice L. Wilshire

Multicenter review of thymectomy indicated for myasthenia gravis favors a left-sided approach and lower severity class, Candice L. Wilshire, CC Fuller, AF Ghanim, RJ Cerfolio, MW Onaitis, V Joshi, DA Wigle, RW Aye, AS Farivar, E Vallières, and BE Louie

Multicenter review of tunnelled pleural catheter implementation and use in patients with malignant pleural effusions, Candice L. Wilshire, CR Gilbert, JA Akulian, R Asciak, B Bevill, KR Davidson, A Delgado, HJ Lee, JE Lewis, F Maldonado, NJ Pastis, NM Rahman, CB Reddy, and See additional authors in comments

TREATMENT REFRACTORY DEPRESSION, John Wurzel and Amy Burns

Link

Integrated measurement of intracellular proteins and transcripts in single cells., Alexander M Xu, Qianhe Liu, Kaitlyn L Takata, Sarah Jeoung, Yapeng Su, Igor Antoshechkin, Sisi Chen, Matthew Thomson, and James R Heath

PDF

Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes., Zhuyi Xue, René L Warren, Ewan A Gibb, Daniel MacMillan, Johnathan Wong, Readman Chiu, S Austin Hammond, Chen Yang, Ka Ming Nip, Catherine A Ennis, Abigail Hahn, Sheila Reynolds, and Inanc Birol

Link

Habitual sleep duration and sleep duration variation are independently associated with body mass index., X Xu, M P Conomos, O Manor, J E Rohwer, A T Magis, and J C Lovejoy

Link

S2 Alar-Iliac Screw Insertion: Technical Note with Pictorial Guide., Emre Yilmaz, Amir Abdul-Jabbar, Tamir Tawfik, Joe Iwanaga, Cameron K Schmidt, Jens R Chapman, Ronen Blecher, R Shane Tubbs, and Rod J Oskouian

Link

Single vs. dual chamber implantable cardioverter-defibrillators or programming of implantable cardioverter-defibrillators in patients without a bradycardia pacing indication: systematic review and meta-analysis., Emily P Zeitler, Gillian D Sanders, Kavisha Singh, Ruth Ann Greenfield, Anne M Gillis, Bruce L Wilkoff, Jonathan P Piccini, and Sana M Al-Khatib

Submissions from 2017

PDF

New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins., Susan Abbatiello, Bradley L Ackermann, Christoph Borchers, Ralph A Bradshaw, Steven A Carr, Robert Chalkley, Meena Choi, Eric Deutsch, Bruno Domon, Andrew N Hoofnagle, Hasmik Keshishian, Eric Kuhn, Daniel C Liebler, Michael MacCoss, Brendan MacLean, D R Mani, Hendrik Neubert, Derek Smith, Olga Vitek, and Lisa Zimmerman

Link

IFPA meeting 2016 workshop report I: Genomic communication, bioinformatics, trophoblast biology and transport systems., Christiane Albrecht, Julie C Baker, Cassidy Blundell, Shawn L Chavez, Lucia Carbone, Larry Chamley, Roberta L Hannibal, Nick Illsley, Peter Kurre, Louise C Laurent, Charles McKenzie, Diana Morales-Prieto, Priyadarshini Pantham, Alison Paquette, Katie Powell, Nathan Price, Balaji M Rao, Yoel Sadovsky, Carlos Salomon, Geetu Tuteja, Samantha Wilson, and P F O'Tierney-Ginn

PDF

High resolution time-course mapping of early transcriptomic, molecular and cellular phenotypes in Huntington's disease CAG knock-in mice across multiple genetic backgrounds., Seth A Ament, Jocelynn R Pearl, Andrea Grindeland, Jason St Claire, John C Earls, Marina Kovalenko, Tammy Gillis, Jayalakshmi Mysore, James F Gusella, Jong-Min Lee, Seung Kwak, David Howland, Min Young Lee, David Baxter, Kelsey Scherler, Kai Wang, Donald Geman, Jeffrey B Carroll, Marcy E MacDonald, George Carlson, Vanessa C Wheeler, Nathan D Price, and Leroy Hood

PDF

Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation., Peter S Askovich, Stephen A Ramsey, Alan H Diercks, Kathleen A Kennedy, Theo A Knijnenburg, and Alan Aderem

Link

A computational study of VEGF production by patterned retinal epithelial cell colonies as a model for neovascular macular degeneration., Qanita Bani Baker, Gregory J Podgorski, Elizabeth Vargis, and Nicholas S Flann

Link

The State of Systems Genetics in 2017., Nitin S Baliga, Johan L M Björkegren, Jef D Boeke, Michael Boutros, Nigel P S Crawford, Aimée M Dudley, Charles R Farber, Allan Jones, Allan I Levey, Aldons J Lusis, H Craig Mak, Joseph H Nadeau, Marcus B Noyes, Enrico Petretto, Nicholas T Seyfried, Lars M Steinmetz, and Sibylle C Vonesch

PDF

Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells., Rhishikesh Bargaje, Kalliopi Trachana, Martin N Shelton, Christopher S McGinnis, Joseph X Zhou, Cora Chadick, Savannah Cook, Christopher Cavanaugh, Sui Huang, and Leroy Hood

PDF

Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.Htt, Robert M Bragg, Sydney R Coffey, Rory M Weston, Seth A Ament, Jeffrey P Cantle, Shawn Minnig, Cory C Funk, Dominic D Shuttleworth, Emily L Woods, Bonnie R Sullivan, Lindsey Jones, Anne Glickenhaus, John S Anderson, Michael D Anderson, Stephen B Dunnett, Vanessa C Wheeler, Marcy E MacDonald, Simon P Brooks, Nathan D Price, and Jeffrey B Carroll

Link

Precision Oncology: Between Vaguely Right and Precisely Wrong., Amy Brock and Sui Huang

Link

Robot-Assisted Total Thymectomy: How I Teach It., Lisa M Brown and Brian Louie

MOTIVATIONAL INTERVIEWING FOR THE PRIMARY CARE PROVIDER, Amy Burns

MOTIVATIONAL INTERVIEWING for UW ICTP PACC ECHO PROGRAM, Amy Burns

MOTIVATIONAL INTERVIEWING SKILLS WORKSHIP PRESENTATION, Amy Burns

POSTER: LET’S GET MOTIVATED: SKILLS ACQUISITION FROM A RESIDENCY MI SEMINAR, Amy Burns

COLLABORATIVE CARE: DELIVERING TEAM-BASED MENTAL HEALTH IN PRIMARY CARE SETTINGS I, Amy Burns and See full authors list in comments

TEACHING INTEGRATED PSYCHIATRIC CARE ACROSS THE TRAINEE, Amy Burns and See full authors list in comments

Link

OA01. 03 Attrition Rate in Community-Based Lung Cancer Screening: One and Done: Topic: Pulmonology, AS Carlson, Candice L. Wilshire, Joelle T Fathi, JR Rayburn, Christopher R Gilbert, SC Blanshan, Brian Louie, Ralph W Aye, Alexander S Farivar, Eric Vallieres, and Jed A Gorden

Link

Attrition rate in community-based lung cancer screening: one and done, AS Carlson, Candice L. Wilshire, JT Fathi, CR Gilbert, SC Blanshan, BE Louie, RW Aye, AS Farivar, E Vallières, and JA Gorden

Attrition rate in community-based lung cancer screening: one and done The International Association for the Study of Lung Cancer 18th World Conference on Lung Cancer Yokohama, Japan, AS Carlson, Candice L. Wilshire, and See all authors in comments

Link

Release of Cell-free MicroRNA Tumor Biomarkers into the Blood Circulation with Pulsed Focused Ultrasound: A Noninvasive, Anatomically Localized, Molecular Liquid Biopsy., John R Chevillet, Tatiana D Khokhlova, Maria D Giraldez, George R Schade, Frank Starr, Yak-Nam Wang, Emily N Gallichotte, Kai Wang, Joo Ha Hwang, and Muneesh Tewari

Link

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments., Meena Choi, Zeynep F Eren-Dogu, Christopher Colangelo, John Cottrell, Michael R Hoopmann, Eugene A Kapp, Sangtae Kim, Henry Lam, Thomas A Neubert, Magnus Palmblad, Brett S Phinney, Susan T Weintraub, Brendan MacLean, and Olga Vitek

Link

POINT AND COUNTERPOINT, Geoffrey Lowell Chupp, Valerie G. Press, Andrea Gershon, Denitza P. Blagev, Caroline Mitchell, Rod Lawson, Wesley H. Self, Matthew W. Semler, Todd W. Rice, Alfin G. Vicencio, Joseph Piccione, Srinath Adusumalli, Bram Geller, Jay Giri, Jed A Gorden, Candice L. Wilshire, and Christopher R Gilbert

PDF

Peripheral huntingtin silencing does not ameliorate central signs of disease in the B6.HttQ111/+ mouse model of Huntington's disease., Sydney R Coffey, Robert M Bragg, Shawn Minnig, Seth A Ament, Jeffrey P Cantle, Anne Glickenhaus, Daniel Shelnut, José M Carrillo, Dominic D Shuttleworth, Julie-Anne Rodier, Kimihiro Noguchi, C Frank Bennett, Nathan D Price, Holly B Kordasiewicz, and Jeffrey B Carroll

PDF

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry., Ben C Collins, Christie L Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger, Samuel L Bader, Daniel W Chan, Bradford W Gibson, Anne-Claude Gingras, Jason M Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P Molloy, Robert L Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N Thomas, Shin-Cheng Tzeng, Hui Zhang, and Ruedi Aebersold

PDF

Exosomal MicroRNA for Detection of Cardiac Sarcoidosis., Elliott D Crouser, Nabeel Y Hamzeh, Lisa A Maier, Mark W Julian, May Gillespie, Mohammad Rahman, David Baxter, Xiaogang Wu, S Patrick Nana-Sinkam, and Kai Wang

PDF

An indicator cell assay for blood-based diagnostics., Samuel A Danziger, Leslie R Miller, Karanbir Singh, G Adam Whitney, Elaine R Peskind, Ge Li, Robert J Lipshutz, John D Aitchison, and Jennifer J Smith

Link

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition., Eric W Deutsch, Attila Csordas, Zhi Sun, Andrew Jarnuczak, Yasset Perez-Riverol, Tobias Ternent, David S Campbell, Manuel Bernal-Llinares, Shujiro Okuda, Shin Kawano, Robert L Moritz, Jeremy J Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, and Juan Antonio Vizcaíno

PDF

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work., Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert, Yasset Perez-Riverol, Reza M Salek, David L Tabb, Stefan Tenzer, Juan Antonio Vizcaíno, Mathias Walzer, and Andrew R Jones

Link

Effect of alkylaminophenols on growth inhibition and apoptosis of bone cancer cells., Phuong Doan, Tien Nguyen, Olli Yli-Harja, Nuno R Candeias, and Meenakshisundaram Kandhavelu

Link

Cancer immunotherapy: Opportunities and challenges in the rapidly evolving clinical landscape., Leisha A Emens, Paolo A Ascierto, Phillip K Darcy, Sandra Demaria, Alexander M M Eggermont, William L. Redmond, Barbara Seliger, and Francesco M Marincola

Link

C30 LUNG CANCER SCREENING: WHO, WHY, WHERE, AND HOW MUCH: Integrating Smoking Cessation Counseling And Treatment In A Lung Cancer Screening Program: An Effective Approach To Long-Term Smoking Cessation Success, Joelle T Fathi, SC Blanshan, AK Wilson, Candice L. Wilshire, Christopher R Gilbert, Ralph W Aye, Alexander S Farivar, Brian Louie, Eric Vallieres, and Jed A Gorden

Link

Electronic medical record inaccuracies: a multi-center analysis of the challenges for population-based lung cancer screening The American Thoracic Society Washington DC, JT Fathi, Candice L. Wilshire, and See all authors in comments

Link

Integrating smoking cessation counselling and treatment in a lung cancer screening program: an effective approach to long-term smoking cessation success The American Thoracic Society Wash, AF Feczko, Candice L. Wilshire, and See all authors in comments

Link

Minority and economically disadvantaged high-risk populations are underrepresented in both centralized and decentralized lung cancer screening models, CC Fuller, Candice L. Wilshire, and M Bretta

Link

A48 COPD: ISSUES IN HEALTH CARE DELIVERY: Electronic Medical Record Inaccuracies: A Multi-Center Analysis Of The Challenges For Population-Based Lung Cancer Screening, CC Fuller, Candice L. Wilshire, Christopher R Gilbert, Joelle T Fathi, JR Handy, KE Costas, Brian Louie, Ralph W Aye, Alexander S Farivar, Eric Vallieres, and Jed A Gorden

Link

D20 LUNG CANCER SCREENING: MOVING FROM POPULATION TO PERSON: Minority And Economically Disadvantaged High-Risk Populations Are Underrepresented In Both Centralized And Decentralized Lung Cancer Screening Models, CC Fuller, Candice L. Wilshire, BM McCall, Christopher R Gilbert, Joelle T Fathi, JR Handy, KE Costas, Brian Louie, Ralph W Aye, Alexander S Farivar, Eric Vallieres, and Jed A Gorden

Link

Applying attractor dynamics to infer gene regulatory interactions involved in cellular differentiation., Ahmadreza Ghaffarizadeh, Gregory J Podgorski, and Nicholas S Flann

PDF

A Cell-Surface Membrane Protein Signature for Glioblastoma., Dhimankrishna Ghosh, Cory C Funk, Juan Caballero, Nameeta Shah, Katherine Rouleau, John C Earls, Liliana Soroceanu, Greg Foltz, Charles Cobbs, Nathan D Price, and Leroy Hood

PDF

Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle., David L Gibbs and Ilya Shmulevich

Link

P1.03-050 Outcomes after the Decision to Biopsy: Results from a Nurse Practitioner Run Multidisciplinary Lung Cancer Screening Program Topic: Screening, Christopher R Gilbert, Joelle T Fathi, Candice L. Wilshire, Brian Louie, Ralph W Aye, Alexander S Farivar, Eric Vallieres, and Jed A Gorden

The financial impact of a nurse practitioner directed lung cancer screening and tobacco related disease program, CR Gilbert, JT Fathi, RE Ely, HE Modin, Candice L. Wilshire, RW Aye, AS Farivar, BE Louie, E Vallières, and JA Gorden

Link

FDG-PET scanning has a limited role in the management of low and intermediate, CR Gilbert, Candice L. Wilshire, and See all authors in comments

Outcomes of radiotherapy and endoscopic airway stenting for central airway obstruction in non-small cell lung cancer International Association for the Study of Lung Cancer Multidisciplinary Symposium in Thoracic Oncology Chicago, Illinois, CR Gilbert, Candice L. Wilshire, and See all authors in comments

PDF

Ultrafast Comparison of Personal Genomes via Precomputed Genome Fingerprints., Gustavo Glusman, Denise E Mauldin, Leroy E Hood, and Max Robinson

PDF

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework., Gustavo Glusman, Peter W Rose, Andreas Prlić, Jennifer Dougherty, José M Duarte, Andrew S Hoffman, Geoffrey J Barton, Emøke Bendixen, Timothy Bergquist, Christian Bock, Elizabeth Brunk, Marija Buljan, Stephen K Burley, Binghuang Cai, Hannah Carter, JianJiong Gao, Adam Godzik, Michael Heuer, Michael Hicks, Thomas Hrabe, Rachel Karchin, Julia Koehler Leman, Lydie Lane, David L Masica, Sean D Mooney, John Moult, Gilbert S Omenn, Frances Pearl, Vikas Pejaver, Sheila M Reynolds, Ariel Rokem, Torsten Schwede, Sicheng Song, Hagen Tilgner, Yana Valasatava, Yang Zhang, and Eric W Deutsch

PDF

Whole-genome DNA methylation status associated with clinical PTSD measures of OIF/OEF veterans., R Hammamieh, N Chakraborty, A Gautam, S Muhie, R Yang, D Donohue, R Kumar, B J Daigle, Y Zhang, D A Amara, S-A Miller, S Srinivasan, J Flory, R Yehuda, L Petzold, O M Wolkowitz, S H Mellon, L Hood, F J Doyle, C Marmar, and M Jett

Outcomes of radiotherapy and endoscopic airway stenting for central airway obstruction in non-small cell lung cancer The International Association for the Study of Lung Cancer 18th World Conference on Lung Cancer Yokohama, Japan, CA Henson, Candice L. Wilshire, and See all authors in comments

Link

One-Cell Doubling Evaluation by Living Arrays of Yeast, ODELAY!, Thurston Herricks, David J Dilworth, Fred D Mast, Song Li, Jennifer J Smith, Alexander V Ratushny, and John D Aitchison

PDF

ODELAY: A Large-scale Method for Multi-parameter Quantification of Yeast Growth., Thurston Herricks, Fred D Mast, Song Li, and John D Aitchison

PDF

A Systematic Study of Dysregulated MicroRNA in Type 2 Diabetes Mellitus., Yuqing He, Yuanlin Ding, Biyu Liang, Juanjuan Lin, Taek-Kyun Kim, Haibing Yu, Hanwei Hang, and Kai Wang

Long-term impact of endoscopic thoracic sympathectomy on quality of life for patients with primary palmar hyperhidrosis, LC Horslen, Candice L. Wilshire, BE Louie, RW Aye, AS Farivar, and E Vallières

PDF

A population-specific reference panel empowers genetic studies of Anabaptist populations., Liping Hou, Rachel L Kember, Jared C Roach, Jeffrey R O'Connell, David W Craig, Maja Bucan, William K Scott, Margaret Pericak-Vance, Jonathan L Haines, Michael H Crawford, Alan R Shuldiner, and Francis J McMahon

PDF

Processes on the emergent landscapes of biochemical reaction networks and heterogeneous cell population dynamics: differentiation in living matters., Sui Huang, Fangting Li, Joseph X Zhou, and Hong Qian

PDF

Evolutionary history of Tibetans inferred from whole-genome sequencing., Hao Hu, Nayia Petousi, Gustavo Glusman, Yao Yu, Ryan Bohlender, Tsewang Tashi, Jonathan M Downie, Jared C Roach, Amy M Cole, Felipe R Lorenzo, Alan R Rogers, Mary E Brunkow, Gianpiero Cavalleri, Leroy Hood, Sama M Alpatty, Josef T Prchal, Lynn B Jorde, Peter A Robbins, Tatum S Simonson, and Chad D Huff

POSTER: LIFE EXPECTANCY DISPARITY AMONG CHRONICALLY MENTALLY ILL PATIETNS IN SPOKANE, WA, Sadeed Jawad and Amy Burns

PDF

Differences between the genomes of lymphoblastoid cell lines and blood-derived samples., Lena M Joesch-Cohen and Gustavo Glusman

PDF

Longitudinal peripheral blood transcriptional analysis of a patient with severe Ebola virus disease., John C Kash, Kathie-Anne Walters, Jason Kindrachuk, David Baxter, Kelsey Scherler, Krisztina B Janosko, Rick D Adams, Andrew S Herbert, Rebekah M James, Spencer W Stonier, Matthew J Memoli, John M Dye, Richard T Davey, Daniel S Chertow, and Jeffery K Taubenberger

PDF

Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding., E V Katkova, A V Onufriev, B Aguilar, and V B Sulimov

Link

Diagnosis of major depressive disorder by combining multimodal information from heart rate dynamics and serum proteomics using machine-learning algorithm., Eun Young Kim, Min Young Lee, Se Hyun Kim, Kyooseob Ha, Kwang Pyo Kim, and Yong Min Ahn

PDF

Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center., Ville Kytola, Umit Topaloglu, Lance D Miller, Rhonda L Bitting, Michael M Goodman, Ralph B D Agostino, Rodwige J Desnoyers, Carol Albright, George Yacoub, Shadi A Qasem, Barry DeYoung, Vesteinn Thorsson, Ilya Shmulevich, Meng Yang, Anastasia Shcherban, Matthew Pagni, Liang Liu, Matti Nykter, Kexin Chen, Gregory A Hawkins, Stefan C Grant, W Jeffrey Petty, Angela Tatiana Alistar, Edward A Levine, Edgar D Staren, Carl D Langefeld, Vincent Miller, Gaurav Singal, Robin M Petro, Mac Robinson, William Blackstock, Bayard L Powell, Lynne I Wagner, Kristie L Foley, Edward Abraham, Boris Pasche, and Wei Zhang

Link

Intensive care unit procedure utilization at the end of life among patients with cancer: a community hospital network experience The American Thoracic Society Washington DC, AS Laliberte, Candice L. Wilshire, and See all authors in comments

Link

The Importance of Standardization on Analyzing Circulating RNA., Inyoul Lee, David Baxter, Min Young Lee, Kelsey Scherler, and Kai Wang

Link

Remodeling of heterochromatin structure slows neuropathological progression and prolongs survival in an animal model of Huntington's disease., Junghee Lee, Yu Jin Hwang, Yunha Kim, Min Young Lee, Seung Jae Hyeon, Soojin Lee, Dong Hyun Kim, Sung Jae Jang, Hyoenjoo Im, Sun-Joon Min, Hyunah Choo, Ae Nim Pae, Dong Jin Kim, Kyung Sang Cho, Neil W Kowall, and Hoon Ryu

PDF

Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks., Hongdong Li, Yang Zhang, Yuanfang Guan, Rajasree Menon, and Gilbert S Omenn

PDF

Modulation of Bax and mTOR for Cancer Therapeutics., Rui Li, Chunyong Ding, Jun Zhang, Maohua Xie, Dongkyoo Park, Ye Ding, Guo Chen, Guojing Zhang, Melissa Gilbert-Ross, Wei Zhou, Adam I Marcus, Shi-Yong Sun, Zhuo G Chen, Gabriel L Sica, Suresh S Ramalingam, Andrew T Magis, Haian Fu, Fadlo R Khuri, Walter J Curran, Taofeek K Owonikoko, Dong M Shin, Jia Zhou, and Xingming Deng

PDF

Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network., William J R Longabaugh, Weihua Zeng, Jingli A Zhang, Hiroyuki Hosokawa, Camden S Jansen, Long Li, Maile Romero-Wolf, Pentao Liu, Hao Yuan Kueh, Ali Mortazavi, and Ellen V Rothenberg

PDF

Adaptive Prediction Emerges Over Short Evolutionary Time Scales., Adrián López García de Lomana, Amardeep Kaur, Serdar Turkarslan, Karlyn D Beer, Fred D Mast, Jennifer J Smith, John D Aitchison, and Nitin S Baliga

PDF

An integrated transcriptomics-guided genome-wide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation., Kamal Mandal, Samuel L Bader, Pankaj Kumar, Dipankar Malakar, David S Campbell, Bhola Shankar Pradhan, Rajesh K Sarkar, Neerja Wadhwa, Souvik Sensharma, Vaibhav Jain, Robert L Moritz, and Subeer S Majumdar

Link

Recessive mutations in SLC35A3 cause early onset epileptic encephalopathy with skeletal defects., Carla Marini, Katia Hardies, Tiziana Pisano, Patrick May, Sarah Weckhuysen, Elena Cellini, Arvid Suls, Davide Mei, Rudi Balling, Peter D Jonghe, Ingo Helbig, Domenico Garozzo, and Renzo Guerrini

PDF

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform, Amy Marshall-Colon, Stephen P Long, Douglas K Allen, Gabrielle Allen, Daniel A Beard, Bedrich Benes, Susanne von Caemmerer, A J Christensen, Donna J Cox, John C Hart, Peter M Hirst, Kavya Kannan, Daniel S Katz, Jonathan P Lynch, Andrew J Millar, Balaji Panneerselvam, Nathan D Price, Przemyslaw Prusinkiewicz, David Raila, Rachel G Shekar, Stuti Shrivastava, Diwakar Shukla, Venkatraman Srinivasan, Mark Stitt, Matthew J Turk, Eberhard O Voit, Yu Wang, Xinyou Yin, and Xin-Guang Zhu

Link

Community network lung cancer screening experience underrepresents medically underserved and geographically remote individuals, BM McCall, Candice L. Wilshire, CC Fuller, CR Gilbert, JT Fathi, JR Handy, KE Costas, BE Louie, RW Aye, AS Farivar, E Vallières, and JA Gorden

PDF

The PeptideAtlas of the Domestic Laying Hen., James McCord, Zhi Sun, Eric W Deutsch, Robert L Moritz, and David C Muddiman

Link

Community network lung cancer screening experience underrepresents medically underserved and geographically remote individuals The International Association for the Study of Lung Ca, AM Meggyesy, Candice L. Wilshire, and See all authors in comments

PDF

A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions., Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, and Frank Schmidt

PDF

Cellular Signaling Pathways in Insulin Resistance-Systems Biology Analyses of Microarray Dataset Reveals New Drug Target Gene Signatures of Type 2 Diabetes Mellitus., Syed Aun Muhammad, Waseem Raza, Thanh Nguyen, Baogang Bai, Xiaogang Wu, and Jake Chen

PDF

SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters., Robert T Nakayama, John L Pulice, Alfredo M Valencia, Matthew J McBride, Zachary M McKenzie, Mark A Gillespie, Wai Lim Ku, Mingxiang Teng, Kairong Cui, Robert T Williams, Seth H Cassel, He Qing, Christian J Widmer, George D Demetri, Rafael A Irizarry, Keji Zhao, Jeffrey A Ranish, and Cigall Kadoch

PDF

Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer., Huân M Ngô, Ying Zhou, Hernan Lorenzi, Kai Wang, Taek-Kyun Kim, Yong Zhou, Kamal El Bissati, Ernest Mui, Laura Fraczek, Seesandra V Rajagopala, Craig W Roberts, Fiona L Henriquez, Alexandre Montpetit, Jenefer M Blackwell, Sarra E Jamieson, Kelsey Wheeler, Ian J Begeman, Carlos Naranjo-Galvis, Ney Alliey-Rodriguez, Roderick G Davis, Liliana Soroceanu, Charles Cobbs, Dennis A Steindler, Kenneth Boyer, A Gwendolyn Noble, Charles N Swisher, Peter T Heydemann, Peter Rabiah, Shawn Withers, Patricia Soteropoulos, Leroy Hood, and Rima McLeod

PDF

Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project., Gilbert S Omenn, Lydie Lane, Emma K Lundberg, Christopher M Overall, and Eric W Deutsch

Link

Progress and Future Direction of Chromosome-Centric Human Proteome Project., Young-Ki Paik, Christopher M Overall, Eric W Deutsch, Jennifer E Van Eyk, and Gilbert S Omenn

Link

A genome wide dosage suppressor network reveals genomic robustness., Biranchi Patra, Yoshiko Kon, Gitanjali Yadav, Anthony W Sevold, Jesse P Frumkin, Ravishankar R Vallabhajosyula, Arend Hintze, Bjørn Østman, Jory Schossau, Ashish Bhan, Bruz Marzolf, Jenna K Tamashiro, Amardeep Kaur, Nitin S Baliga, Elizabeth J Grayhack, Christoph Adami, David J Galas, Alpan Raval, Eric M Phizicky, and Animesh Ray

Link

Enhanced retinal responses in Huntington's disease patients., Jocelynn R Pearl, Laura M Heath, Dani E Bergey, John P Kelly, Corrie Smith, Mercy Y Laurino, Avery Weiss, Nathan D Price, Albert LaSpada, Thomas D Bird, and Suman Jayadev

PDF

Discovering and linking public omics data sets using the Omics Discovery Index., Yasset Perez-Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J Carroll, Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi Del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira, Eric W Deutsch, David S Campbell, Ronald C Beavis, Reza M Salek, Ugis Sarkans, Robert Petryszak, Maria Keays, Eoin Fahy, Manish Sud, Shankar Subramaniam, Ariana Barbera, Rafael C Jiménez, Alexey I Nesvizhskii, Susanna-Assunta Sansone, Christoph Steinbeck, Rodrigo Lopez, Juan A Vizcaíno, Peipei Ping, and Henning Hermjakob